Support#
We work hard to ensure that circtools is a powerful tool empowering your research. However, no software is free of bugs and issues, therefore we would love to get feedback from our users.
Report issues via GitHub#
There are different options file an issues with out circRNA related software. Whenever possible please try to provide as much information as possible - this help to quickly assess the problem and fix it. Especially helpful are
Software versions used
Log files
The command line used to call the software
Sample data files in order to reproduce the error
Temporary files that may contain pointers to fix the issues
Please use the following GitHub link to file your issue:
Click here to file a circtools issues
Via Mail#
If you do not have a GitHub account you can also reach use via mail: circtools@jakobilab.org
Literature#
circtools circRNA software suite: Jakobi, T., Uvarovskii, A., & Dieterich, C. (2019). circtools—a one-stop software solution for circular RNA research. Bioinformatics, 35(13), 2326-2328.
circRNAs in human cardiovascular cell models and cardiac tissue : Jakobi, T., Siede, D., Eschenbach, J., Heumüller, A.W., Busch, M., Nietsch, R., Meder, B., Most, P., Dimmeler, S., Backs, J. and Katus, H.A., 2020. Deep characterization of circular RNAs from human cardiovascular cell models and cardiac tissue. Cells, 9(7), p.1616.
circRNAs in murine hearts: Jakobi, T., Czaja-Hasse, L.F., Reinhardt, R. and Dieterich, C., 2016. Profiling and validation of the circular RNA repertoire in adult murine hearts. Genomics, proteomics & bioinformatics, 14(4), pp.216-223.
circtools circRNA analysis workflow: Jakobi, T. and Dieterich, C., 2018. Deep Computational Circular RNA Analytics from RNA-seq Data. In Circular RNAs (pp. 9-25). Humana Press, New York, NY.
circtools reconstruct/ FUCHS: Metge, F., Czaja-Hasse, L.F., Reinhardt, R. and Dieterich, C., 2017. FUCHS—towards full circular RNA characterization using RNAseq. PeerJ, 5, p.e2934.circtools detect/ DCC: Cheng, J., Metge, F. and Dieterich, C., 2015. Specific identification and quantification of circular RNAs from sequencing data. Bioinformatics, 32(7), pp.1094-1096.